PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0022600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 141aa    MW: 15384.5 Da    PI: 5.7624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0022600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.9e-06981193455
                      TTS-STCHHHHHHHHHHHHHHH CS
              HLH  34 pskKlsKaeiLekAveYIksLq 55 
                        + ls ae+L +A +YI++Lq
  Spipo10G0022600  98 AERQLSTAEMLDMALDYIRDLQ 119
                      3455*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.8E-777133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-594123No hitNo description
SuperFamilySSF474592.09E-698130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MYGSPTTSRD LNLAFEVASE IPGLPVSSWD DPSLLSDGFV GSLRRARDPP EVQNGDAGIY  60
FSLPKNSPEM ASLLRFQDAV PCKIRAKRGC ATHPRSIAER QLSTAEMLDM ALDYIRDLQE  120
QVKKLSKSKA DCTCLHNDGV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928471.15e-38PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR31e-28BH130_ARATH; Transcription factor bHLH130
TrEMBLT1N8357e-38T1N835_TRIUA; Uncharacterized protein
STRINGBRADI3G39927.13e-35(Brachypodium distachyon)
STRINGMLOC_67834.16e-35(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-30bHLH family protein